SNPSpD / SNPSpDlite
:: DESCRIPTION
SNPSpD is a method of correcting for non-independence of SNPs in LD with each other
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SNPSpDlite takes the same input at SNPSpD, but ONLY outputs the LD correlation matrix, Meff and MeffLi estimates and GOLD input (i.e., does not perform time-consuming varimax/promax rotations) thus allowing users to obtain Meff/MeffLi values for large numbers (1000s) of SNPs.
::DEVELOPER
the Statistical and Genomic Epidemiology Laboratory (SGEL)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Web Browser
:: DOWNLOAD
:: MORE INFORMATION
Citation
Am J Hum Genet. 2004 Apr;74(4):765-9. Epub 2004 Mar 2.
A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other.
Nyholt DR.