Snippy 4.6.0 – Find SNPs/indels in a Bacterial Genome from NGS reads

Snippy 4.6.0

:: DESCRIPTION

Snippy finds SNPs between a haploid reference genome and your NGS sequence reads (handles reads >500bp long). It will find both substitutions and insertions/deletions (indels).

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::DEVELOPER

Torsten Seemann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • bwa mem
  • samtools
  • awk

:: DOWNLOAD

 Snippy

:: MORE INFORMATION