Sircah 1.0

:: DESCRIPTION

Sircah is an application written in python that dectects and visualises alternative splicing events using spliced alignments.Sircah takes as input transcript models in the GFF3 format allowing the user the flexibility to choose the sources of evidence for the use in detecting alternative transcription. Such transcript models may come from the gene prediction pipelines of genome databases or from spliced alignments of ESTs or proteins against the genome.

::DEVELOPER

Bork Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / MacOsX
• Python
• The elementtree package for Python.
•  SQLAlchemy package
• MySQL 

:: DOWNLOAD

 Sircah

:: MORE INFORMATION

Citation

Sircah: a tool for the detection and visualization of alternative transcripts.
Harrington ED, Bork P.
Bioinformatics. 2008 Sep 1;24(17):1959-60. Epub 2008 Jul 17.