SimPlot 3.5.1 – Sequence Similarity Plotting

SimPlot 3.5.1

:: DESCRIPTION

SimPlot (Similarity Plotting) (as well as bootscanning, quick tree generation, and informative-sites analysis) is a popular tool for recombination analysis.

::DEVELOPER

Stuart Ray, M.D.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

SimPlot if you cannot make that work, please email me for a download link

:: MORE INFORMATION

Reference to the paper in which author first described SimPlot

Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC.
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination.
J Virol. 1999 Jan;73(1):152-60.

10 thoughts on “SimPlot 3.5.1 – Sequence Similarity Plotting”

  1. Hello, good afternoon.
    I would like to use software for bioinformatic analysis for research purposes. I currently live in Mexico and am pursuing a postgraduate degree in animal production and health sciences.
    It would be very useful to me.

    Best regards.

  2. Dear colleague,

    I am contacting you to see if you could share with me the version 3.5.1 of your software SimPlot.
    I am currently working on the identification of novel coronaviruses from bats, and I would like to use your program to compare my novel viruses to already describe bat coronaviruses.

    Thanking you in advance
    Best regards
    Sarah (research engineer at Institut Pasteur, France)

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