Segtools is a Python package for analyzing genomic segmentations. The software efficiently calculates a variety of summary statistics and produces corresponding publication quality visualizations. The overall goal of Segtools is to provide a bird’s-eye view of complex genomic data sets, allowing researchers to easily generate and confirm hypotheses.
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Buske OJ, Hoffman MM, Ponts N, Le Roch KG, Noble WS. Oct 2011.
Exploratory analysis of genomic segmentations with Segtools.
BMC Bioinformatics, 12:415; doi:10.1186/1471-2105-12-415