SCATE

:: DESCRIPTION

SCATE integrates information from co-activated CREs, similar cells, and publicly available regulome data to substantially increase the accuracy for estimating individual CRE activities in single cell and rare cell subpopulations.

::DEVELOPER

Zhicheng Ji

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows
• R

:: DOWNLOAD

SCATE

:: MORE INFORMATION

Citation

Ji Z, Zhou W, Hou W, Ji H.
Single-cell ATAC-seq signal extraction and enhancement with SCATE.
Genome Biol. 2020 Jul 3;21(1):161. doi: 10.1186/s13059-020-02075-3. PMID: 32620137; PMCID: PMC7333383.