SAQC (SNP Array Quality Control)software is written in R and R-GUI and was developed as a user-friendly tool for the visualization and evaluation of data quality of genome-wide SNP arrays.
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Hsin-Chou Yang*, Hsin-Chi Lin, Meijyh Kang, Chun-Houh Chen, Chien-Wei Lin, Ling-Hui Li, Jer-Yuarn Wu, Yuan-Tsong Chen, and Wen-Harn Pan (2011).
SAQC: SNP array quality control.
BMC Bioinformatics 12, 100.