RTCGAToolbox is an open source and extensible R based data client for Firehose pre-processed data and demonstrated its use with sample case studies. Results showed that RTCGAToolbox could improve data management for researchers who are interested with TCGA data. In addition, it can be integrated with other analysis pipelines for further data analysis.
- Windows / Linux / MacOsX
- R Package
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RTCGAToolbox: a new tool for exporting TCGA Firehose data.
PLoS One. 2014 Sep 2;9(9):e106397. doi: 10.1371/journal.pone.0106397. PMID: 25181531; PMCID: PMC4152273.