RNAMoIP 1.1 – Automated Prediction Framework for RNA Tertiary Structures

RNAMoIP 1.1

:: DESCRIPTION

RNA-MoIP is an integer programming framework that refines predicted secondary structures (i.e. removes incorrect canonical base-pairs) to accommodate the insertion of RNA 3D motifs (i.e. hairpins, internal loops and k-way junctions). The predictions can be used as templates to generate complete 3D structures with the MC-Sym program.

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::DEVELOPER

Computer Science and Biology at McGill

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python

:: DOWNLOAD

 RNAMoIP

:: MORE INFORMATION

Citation:

Yao J, Reinharz V, Major F, Waldispühl J.
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res. 2017 Jul 3;45(W1):W440-W444. doi: 10.1093/nar/gkx429. Erratum in: Nucleic Acids Res. 2017 Jul 3;45(W1):W573. PMID: 28525607; PMCID: PMC5793723.