RIsearch 1.2

:: DESCRIPTION

RIsearch is a program for fast RNA-RNA interaction search. It employs a modified Smith-Waterman-Gotoh algorithm based on di-nucleotides to approximate nearest-neighbor energy parameters.

::DEVELOPER

Center for non-coding RNA in Technology and Health (RTH)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

 RIsearch

:: MORE INFORMATION

Citation

Alkan F, Wenzel A, Palasca O, Kerpedjiev P, Rudebeck AF, Stadler PF, Hofacker IL, Gorodkin J.
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets.
Nucleic Acids Res. 2017 May 5;45(8):e60. doi: 10.1093/nar/gkw1325. PMID: 28108657; PMCID: PMC5416843.

Bioinformatics. 2012 Aug 24. [Epub ahead of print]
RIsearch: Fast RNA-RNA interaction search using a simplified nearest-neighbor energy model.
Wenzel A, Akbasli E, Gorodkin J.