ReMixT v0.5.18 – Clone-specific Genomic Structure Estimation in Cancer

ReMixT v0.5.18

:: DESCRIPTION

ReMixT is a tool for joint inference of clone specific segment and breakpoint copy number in whole genome sequencing data. The input for the tool is a set of segments, a set of breakpoints predicted from the sequencing data, and normal and tumour bam files. Where multiple tumour samples are available, they can be analyzed jointly for additional benefit.

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::DEVELOPER

Lab for Bioinformatics and Computational Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Python

:: DOWNLOAD

ReMixT

:: MORE INFORMATION

Citation

ReMixT: clone-specific genomic structure estimation in cancer.
McPherson AW, Roth A, Ha G, Chauve C, Steif A, de Souza CPE, Eirew P, Bouchard-C?té A, Aparicio S, Sahinalp SC, Shah SP.
Genome Biol. 2017 Jul 27;18(1):140. doi: 10.1186/s13059-017-1267-2.

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