Recco 0.93
:: DESCRIPTION
Recco (Recombination Analysis Using Cost Optimization) analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence with all other sequences in the alignment using mutation and recombination. A parametric analysis of the parameter alpha, which weights recombination cost against mutation cost, yields additional information as to which sequence might be recombinant.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Windows / Mac OsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Maydt, J. and T. Lengauer (2006).
“Recco: Recombination Analysis Using Cost Optimization.”,
Bioinformatics 2006, 22(9):1064-1071, doi:10.1093/bioinformatics/btl057.