REAPR 1.0
:: DESCRIPTION
The REAPR pipeline performs computational screens for structural non-coding RNA while revealing even strongly structurally misaligned RNAs.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / MacOsX
- python
- LocARNA
- RNAz
- ViennaRNA
- squid
- compalignp
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Sebastian Will, Michael Yu, and Bonnie Berger.
“Structure-based Whole Genome Realignment Reveals Many Novel Non-coding RNAs.”
Genome Res. 2013 Jun;23(6):1018-27. doi: 10.1101/gr.137091.111.