RaTrav 20130916 – Calculating Mean First Passage Times using Hill’s and Monte Carlo algorithms

RaTrav 20130916

:: DESCRIPTION

RaTrav tool was designed to support computational biology studies where mean first-passage times (MFPTs) between initial and single, or multiple, final states in network-like systems are used. Two methods are made available for which their efficiency is strongly dependent on the topology of the defined network. The user is required to prepare a text file with the structure of a given network, along with some additional basic parameters.

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::DEVELOPER

Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 RaTrav

:: MORE INFORMATION

Citation

M. Torchala, P. Chelminiak and P. A. Bates,
‘Mean first-passage time calculations: comparison of the deterministic Hill’s algorithm with Monte Carlo simulations‘,
Eur. Phys. J. B 85 116 (2012).