PROBer v0.3.1 – Toolkit for Analyzing Sequencing-based ‘Toeprinting’ Assays

PROBer v0.3.1

:: DESCRIPTION

PROBer is the first unified probabilistic framework for the analysis of a diverse set of sequencing-based ‘toeprinting’ assays. These assays are used to probe RNA secondary structure (DMS/SHAPE-Seq), detect epitranscriptomic mark (Pseudo-Seq), or identify RNA-protein interaction (iCLIP/eCLIP), which are important to understanding post-transcriptional gene regulation from all aspects.

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::DEVELOPER

Pachter Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

PROBer

:: MORE INFORMATION

Citation

Cell Syst, 4 (5), 568-574.e7 2017 May 24
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays
Bo Li , Akshay Tambe , Sharon Aviran , Lior Pachter

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