PottersWheel 4.0
:: DESCRIPTION
PottersWheel is a MATLAB toolbox for mechanistic mathematical modeling. It allows reaction network or ordinary differential equation (ODE) based modeling.
PottersWheel has been developed to provide an intuitive and yet powerful framework for data-based modeling of dynamical systems like biochemical reaction networks. Its key functionality is multi-experiment fitting, where several experimental data sets from different laboratory conditions are fitted simultaneously in order to improve the estimation of unknown model parameters, to check the validity of a given model, and to discriminate competing model hypotheses. New experiments can be designed interactively. Models are either created text based or using a visual model designer. Dynamically generated and compiled C files provide fast simulation and fitting procedures. Each function can either be accessed using a graphical user interface or via command line, allowing for batch processing within custom Matlab scripts.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows/ Linux / Mac OsX
- MATLAB
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mathematical modeling of biochemical systems with PottersWheel.
Maiwald T, Eberhardt O, Blumberg J.
Methods Mol Biol. 2012;880:119-38. doi: 10.1007/978-1-61779-833-7_8.