PASA v2.4.1

:: DESCRIPTION

PASA (Program to Assemble Spliced Alignments) is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.

::DEVELOPER

J. Craig Venter Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux /Mac OsX
• Apache
• Perl
• GMAP
• fasta
• slclust
• cdbfasta

:: DOWNLOAD

PASA

:: MORE INFORMATION

Citation:

Haas, B.J., Delcher, A.L., Mount, S.M., Wortman, J.R., Smith Jr, R.K., Jr., Hannick, L.I., Maiti, R., Ronning, C.M., Rusch, D.B., Town, C.D. et al. (2003)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
Nucleic Acids Res, 31, 5654-5666.