ORCAtk 1.0.0 – Transcription Factor Binding Site Detection using Phylogenetic Footprinting

ORCAtk 1.0.0

:: DESCRIPTION

The ORCA Toolkit is a system for finding putative regulatory regions and transcription factor binding sites (TFBSs) within those regions.

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::DEVELOPER

The Wasserman Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/MacOsX/Linux
  • Perl

:: DOWNLOAD

 ORCAtk

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jan;37(Database issue):D54-60. doi: 10.1093/nar/gkn783. Epub 2008 Oct 29.
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences.
Portales-Casamar E, Arenillas D, Lim J, Swanson MI, Jiang S, McCallum A, Kirov S, Wasserman WW.