novoSpaRc 0.4.3 – de novo Spatial Reconstruction of Single-Cell Gene Expression

novoSpaRc 0.4.3

:: DESCRIPTION

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data.

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::DEVELOPER

N. Rajewsky Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

novoSpaRc

:: MORE INFORMATION

Citation

Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M.
NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport.
Nat Protoc. 2021 Sep;16(9):4177-4200. doi: 10.1038/s41596-021-00573-7. Epub 2021 Aug 4. PMID: 34349282.

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