NICE
:: DESCRIPTION
NICE is a statistical test for correcting for expression heterogeneity inherent in expression dataset due to confounding from unmodeled factors. NICE estimates inter-sample correlation structure using only the genes with confounding effects and incorporates it as signatures of the systematic confounding effects to correct for it.
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:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / WIndows /MacOsX
- R
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Joo JW, Sul JH, Han B, Ye C, Eskin E.
Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies,
Genome Biology, 15:r61, 2014.