msatcommander 1.0.8 – Locate Microsatellite Repeats, Design Locus-specific Primers, and Tag ’em

msatcommander 1.0.8

:: DESCRIPTION

msatcommander is a python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatcommander will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations of repeat types).

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::DEVELOPER

faircloth-lab

:: SCREENSHOTS

msatcommander

:: REQUIREMENTS

  • MacOsX/Windows
  • Python

:: DOWNLOAD

 msatcommander

:: MORE INFORMATION

Citation

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design.
Faircloth BC.
Mol Ecol Resour. 2008 Jan;8(1):92-4. doi: 10.1111/j.1471-8286.2007.01884.x.