mlRho 2.9 – Estimate the Population Mutation and Recombination Rates from Shotgun-Sequenced Diploid Genomes

mlRho 2.9

:: DESCRIPTION

mlRho takes as input a file with assembled reads from a single diploid individual and returns maximum likelihood estimates of the population mutation rate, $\theta$, the sequencing error $\epsilon$, the zygosity correlation, and the population recombination rate, $\rho$

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::DEVELOPER

Bernhard Haubold

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX
  • C Compiler

:: DOWNLOAD

 mlRho

:: MORE INFORMATION

Citation

B. Haubold, P. Pfaffelhuber, and M. Lynch.
mlRho: A program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes.
Molecular Ecology, 19:277-284, 2010.