MFPaQ 4.0.0 – Parse, Validate, and Quantify MS Proteomics Data

MFPaQ 4.0.0


MFPaQ (Mascot File Parsing and Quantification ) is a new web application dedicated to parse, validate, and quantify proteomics data. It allows fast and user-friendly verification of Mascot result files, as well as data quantification using isotopic labeling methods (SILAC/ICAT) or label free approaches (spectral counting, MS signal comparison).



the MFPaQ developper



  • Linux/Windows/MacOsx
  • Firefox 2 or higher
  • Mascot server 2.1 or higher
  • Apache
  • Perl





Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard J-P, and Monsarrat B.
MFPaQ, a new software to parse, validate, and quantify proteomic data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomic study of membrane proteins from primary human endothelial cells
Molecular & Cellular Proteomics, 6, 1621-1637

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