metaSNV v2.0.1 – Metagenomic SNV Calling Pipeline

metaSNV v2.0.1

:: DESCRIPTION

MetaSNV is a pipeline for calling metagenomic single nucleotide variants (SNVs). It was designed to scale well with the exponentially increasing amount of available metagenomic datasets and is capable of handling large multi-species references.

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::DEVELOPER

metaSNV team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python

:: DOWNLOAD

metaSNV

:: MORE INFORMATION

Citation:

Van Rossum T, Costea PI, Paoli L, Alves R, Thielemann R, Sunagawa S, Bork P.
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.
Bioinformatics. 2021 Nov 17:btab789. doi: 10.1093/bioinformatics/btab789. Epub ahead of print. PMID: 34791031.

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