MentaLiST v0.2.5 – A fast MLST caller for large MLST schemes

MentaLiST v0.2.5

:: DESCRIPTION

MLST (multi-locus Sequence Typing) is a classic technique for genotyping bacteria, widely applied for pathogen outbreak surveillance.

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MentaLiST is a new MLST caller, based on a k-mer counting algorithm and written in the Julia language, specifically designed and implemented to handle large typing schemes.

::DEVELOPER

Computational Methods for Paleogenomics and Comparative Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • conda

:: DOWNLOAD

MentaLiST

:: MORE INFORMATION

Citation

Feijao P, Yao HT, Fornika D, Gardy J, Hsiao W, Chauve C, Chindelevitch L.
MentaLiST – A fast MLST caller for large MLST schemes.
Microb Genom. 2018 Feb;4(2):e000146. doi: 10.1099/mgen.0.000146. Epub 2018 Jan 10. PMID: 29319471; PMCID: PMC5857373.

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