MentaLiST v0.2.5
:: DESCRIPTION
MLST (multi-locus Sequence Typing) is a classic technique for genotyping bacteria, widely applied for pathogen outbreak surveillance.
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MentaLiST is a new MLST caller, based on a k-mer counting algorithm and written in the Julia language, specifically designed and implemented to handle large typing schemes.
::DEVELOPER
Computational Methods for Paleogenomics and Comparative Genomics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
- conda
:: DOWNLOAD
:: MORE INFORMATION
Citation
Feijao P, Yao HT, Fornika D, Gardy J, Hsiao W, Chauve C, Chindelevitch L.
MentaLiST – A fast MLST caller for large MLST schemes.
Microb Genom. 2018 Feb;4(2):e000146. doi: 10.1099/mgen.0.000146. Epub 2018 Jan 10. PMID: 29319471; PMCID: PMC5857373.