jump3 – Inference of Gene Regulatory Networks

jump3

:: DESCRIPTION

Jump3 is based on a formal on/off model of gene expression, but uses a non-parametric procedure based on decision trees (called “jump trees”) to reconstruct the GRN topology, allowing the inference of networks of hundreds of genes.

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::DEVELOPER

vân anh huynh-thu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • MatLab / R Package

:: DOWNLOAD

 jump3

:: MORE INFORMATION

Citation

Combining tree-based and dynamical systems for the inference of gene regulatory networks.
Huynh-Thu VA, Sanguinetti G.
Bioinformatics. 2015 Jan 7. pii: btu863.