JPREdictor 1.23
:: DESCRIPTION
jPREdictor is a tool for the prediction of cis-regulatory elements, e.g. PRE/TREs in Drosophila melanogaster. Short sequence fragments, namely transcription factor binding sites, are known to be enriched and clustered in such elements. These binding sites are represented as motifs and for the prediction, they must be known. Using these motifs, it is possible to search them on sequences, to weight them by applying a positive or negative training set (model or background, respectively) and to score a sequence.
::DEVELOPER
Thomas Fiedler & Marc Rehmsmeier
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Mac / Windows
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Thomas Fiedler
The jPREdictor and its Application to Motif Discovery, Motif Clustering and the Prediction of Polycomb/Trithorax Response Elements
Dissertation, Univerity of Bielefeld, Apr 2008
Thomas Fiedler and Marc Rehmsmeier
jPREdictor: a versatile tool for the prediction of cis-regulatory elements
Nucleic Acids Research, 34:W546-W550, 2006