JASPAR 2020 – Transcription Factor Binding Profile Database

JASPAR 2020

:: DESCRIPTION

JASPAR is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species.

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::DEVELOPER

The Wasserman Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/MacOsX/Linux
  • R package/BioConductor/BioPython

:: DOWNLOAD

  JASPAR for BioConductor

:: MORE INFORMATION

Citation

Fornes O, Castro-Mondragon JA, Khan A, et al.
JASPAR 2020: update of the open-access database of transcription factor binding profiles.
Nucleic Acids Res. 2019; doi: 10.1093/nar/gkz1001

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ, Buchman S, Chen CY, Chou A, Ienasescu H, Lim J, Shyr C, Tan G, Zhou M, Lenhard B, Sandelin A, Wasserman WW.
Nucleic Acids Res. 2013 Nov 4.