iPool-Seq v1.0.3 – Analysis Pipeline for Insertion Pool Sequencing data

iPool-Seq v1.0.3

:: DESCRIPTION

The iPool-Seq analysis pipeline is based on the TRUmiCount algorithm for the quantitative analysis of UMI data, and takes are of all steps of the analysis of iPool-Seq data. From from raw sequencing reads it computes the differential virulences of the mutants in the pre-infection pool compared to a set of reference mutants.

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::DEVELOPER

the Center of Integrative Bioinformatics Vienna (CIBIV)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

iPool-Seq

:: MORE INFORMATION

Citation

Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions.
Uhse S, Pflug FG, von Haeseler A, Djamei A.
Curr Protoc Plant Biol. 2019 Sep;4(3):e20097. doi: 10.1002/cppb.20097.

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