iPool-Seq v1.0.3
:: DESCRIPTION
The iPool-Seq analysis pipeline is based on the TRUmiCount algorithm for the quantitative analysis of UMI data, and takes are of all steps of the analysis of iPool-Seq data. From from raw sequencing reads it computes the differential virulences of the mutants in the pre-infection pool compared to a set of reference mutants.
::DEVELOPER
the Center of Integrative Bioinformatics Vienna (CIBIV)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions.
Uhse S, Pflug FG, von Haeseler A, Djamei A.
Curr Protoc Plant Biol. 2019 Sep;4(3):e20097. doi: 10.1002/cppb.20097.