HRIBO 1.5.1 – High-throughput Annotation by Ribo-seq

HRIBO 1.5.1

:: DESCRIPTION

HRIBO is a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.

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::DEVELOPER

HRIBO team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Conda

:: DOWNLOAD

HRIBO

:: MORE INFORMATION

Citation

Gelhausen R, Svensson SL, Froschauer K, Heyl F, Hadjeras L, Sharma CM, Eggenhofer F, Backofen R.
HRIBO: high-throughput analysis of bacterial ribosome profiling data.
Bioinformatics. 2021 Aug 4;37(14):2061-2063. doi: 10.1093/bioinformatics/btaa959. Erratum in: Bioinformatics. 2021 Jul 16;: PMID: 33175953; PMCID: PMC8337001.

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