HiCNet – Reconstruct High-resolution Chromosome 3D Structures based on Hi-C Complex Networks

HiCNet

:: DESCRIPTION

HiCNet is an approach for establishing small-world networks for individual chromosomes using Hi-C data. It is a tool capable of converting Hi-C contacts to spatial distances. And it can also infer three-dimensional structures using spatial distances and multidimensional scaling methods.

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::DEVELOPER

Z. WANG LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

HiCNet

:: MORE INFORMATION

Citation

Liu T, Wang Z.
Reconstructing high-resolution chromosome three-dimensional structures by Hi-C complex networks.
BMC Bioinformatics. 2018 Dec 28;19(Suppl 17):496. doi: 10.1186/s12859-018-2464-z. PMID: 30591009; PMCID: PMC6309071.

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