HapCompass 0.8.2
:: DESCRIPTION
HapCompass for polyploid genomes can currently be used to create accurate pairwise SNP phasings.Given a set of aligned sequence reads in a SAM file and a set of variant calls in VCF format, HAPCOMPASS will assemble reads into haplotypes.
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::DEVELOPER
The Istrail Laboratory of Brown University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/ Windows/ MacOsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data.
Aguiar D, Istrail S.
J Comput Biol. 2012 Jun;19(6):577-90. doi: 10.1089/cmb.2012.0084.