GRASS 0.003
:: DESCRIPTION
GRASS is a generic algorithm for scaffolding next-generation sequencing assemblies.It offers a Mixed-Integer Programming (MIP) formulation of the contig sca olding problem, which com-bines contig order, distance and orientation in a single optimization objective. The resulting optimization problem is solved using an Expectation-Maximization procedure and an uncon-strained binary quadratic programming approximation of the original problem. Please refer to the original manuscript for details.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- IBM ILOG CPLEX Optimizer
- NCBI C++ Toolkit
- Boost C++ Libraries
- BamTools C++ API
- BWA
- NovoAlign
- SAMTools
- MUMmer
:: DOWNLOAD
:: MORE INFORMATION