GOAP
:: DESCRIPTION
GOAP is a generalized orientation-dependent, all-atom statistical potential for protein structure prediction. It was benchmarked against other state-the-art similar potentials and was shown to be significantly better for discriminating native structures from decoys
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::DEVELOPER
Center for the Study of Systems Biology
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
H. Zhou and J. Skolnick:
GOAP: A generalized orientation-dependent, all-atom statistical potential for protein structure prediction,
Biophysical Journal, 101(8):2043-2052, 2011
Dear Dr. Zhou and Dr. Skolnick,
When I calculate the GOAP score of a PDB (e.g., 1mal.pdb downloaded from wwPDB), an error ‘Segmentation fault (core dumped)’ occured. I tested different PDBs, such as part of 1mal.pdb and the t0281.pdb in your deposited zip. And I found when the size of PDB is less than 950 KB, the ./goap<tmp.inp can be executed. Also, I test different system, the error still occured. Could you give some suggestion about this error? Or is there any solution?
Thank you in advance!
Xianni
iHuman institute, ShanghaiTech University