genBlastA 1.0.4 / genBlastG 1.39 – Homologous Gene Sequences

genBlastA 1.0.4 / genBlastG 1.39

:: DESCRIPTION

genBlast is a program suite, consisting of two programs: genBlastA and genBlastG.

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genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs. Each HSP group represent a putative gene that is homologous to the query protein (gene).

genBlastG is a fast homology-based gene finder. It builds on genBlastA. In particular, it takes genBlastA output as input and define gene models baesd on the HSP group.

::DEVELOPER

Jack Chen lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 genBlastA / genBlastG

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Aug 1;27(15):2141-3. doi: 10.1093/bioinformatics/btr342. Epub 2011 Jun 8.
genBlastG: using BLAST searches to build homologous gene models.
She R1, Chu JS, Uyar B, Wang J, Wang K, Chen N.

Genome Res. 2009 Jan;19(1):143-9. doi: 10.1101/gr.082081.108. Epub 2008 Oct 6.
GenBlastA: enabling BLAST to identify homologous gene sequences.
She R1, Chu JS, Wang K, Pei J, Chen N.