fragScaff

:: DESCRIPTION

FragScaff leverages coincidences between the content of different pools as a source of contiguity information for scaffolding de novo genome assemblies. FragScaff is complementary to Lachesis, providing midrange contiguity to support robust, accurate chromosome-scale de novo genome assemblies without the need for laborious in vivo cloning steps.

::DEVELOPER

Shendure Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / WIndows
• Perl

:: DOWNLOAD

fragScaff

:: MORE INFORMATION

Citation

Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J.
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.
Genome Res. 2014 Dec;24(12):2041-9. doi: 10.1101/gr.178319.114. Epub 2014 Oct 19. PMID: 25327137; PMCID: PMC4248320.