FR3D 20120611 / WebFR3D – Find Structural Motifs in RNA 3D Structures

FR3D 20120611 / WebFR3D

:: DESCRIPTION

FR3D stands for “Find RNA 3D” and is commonly pronounced “Fred”.  It was developed to find small RNA motifs (two to 20 nucleotides) in PDB files.

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WebFR3D is the online version of FR3D, a suite of Matlab programs designed to search RNA 3D structures for user specified queries.

::DEVELOPER

BGSU RNA Bioinformatics Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • MATLAB

:: DOWNLOAD

 FR3D

:: MORE INFORMATION

Citation:

Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis.
FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures,
Journal of Mathematical Biology (2008) 56:215–252.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W50-5. doi: 10.1093/nar/gkr249. Epub 2011 Apr 22.
WebFR3D–a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI1, Zirbel CL, Leontis NB.

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