FishingCNV 2.1 – Detecting rare Copy Number Variations in Exome-sequencing data

FishingCNV 2.1

:: DESCRIPTION

FishingCNV is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs.

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::DEVELOPER

Yuhao Shi (yuhao.shi@mail.mcgill.ca)

:: SCREENSHOTS

FishingCNV

:: REQUIREMENTS

  • Linux /MacOsX/ Windows
  • R package
  • Java 

:: DOWNLOAD

 FishingCNV

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jun 1;29(11):1461-2. doi: 10.1093/bioinformatics/btt151. Epub 2013 Mar 28.
FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.
Shi Y1, Majewski J.