FASSI 1.0

:: DESCRIPTION

FASSI (Fingerprint and Assembly Incorporation) is a stand-alone Perl application, that calculates BAC end and BAC overlap length constraints from clone fingerprint map contigs created by the FPC package to improve the contiguity of whole-genome shotgun sequence (WGS) assemblies.

::DEVELOPER

Canada’s Michael Smith Genome Sciences Centre

:: REQUIREMENTS

• Linux
• Perl

:: DOWNLOAD

 FASSI

:: MORE INFORMATION

Citation

Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang S-P, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJM. 2006.
Physical map-assisted whole-genome shotgun sequence assemblies.
Genome Res. 16:768-775