ESTprep 3.1.4 – Preprocessing cDNA Sequence Reads

ESTprep 3.1.4

:: DESCRIPTION

ESTprep is a program that performs the preprocessing for cDNA reads. It is a part of ESTprep Suite which contains other utilities for producing different levels of output, including HTML formatted file. The program detects all the characterstics found within a sequence viz. restriction site, cloning vector, polyA tail, library tag, polyA signal. It also predicts whether the sequence should be used for further processing or should be rejected. If accepted the  region within the sequence which is high quality is also identified.

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::DEVELOPER

Coordinated Laboratory for Computational Genomics (CLCG)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 ESTprep

:: MORE INFORMATION

Citation

Bioinformatics. 2003 Jul 22;19(11):1318-24.
ESTprep: preprocessing cDNA sequence reads.
Scheetz TE1, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O’Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL.