EpiTensor 0.9
:: DESCRIPTION
Epitensor is a software package that can construct 3-D interactions from 1-D epigenomes. It uses tensor to represent high-dimensional epigenomic data of various assays in multiple cell types, and the utilizes tensor decomposition to break the tensor into cell-type, assay, and genomic locus subspaces. The genomic locus subspace captures epigenomic patterns across distal loci and is associated with 3-D interactions among regulatory elements
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Zhu Y, Chen Z, Zhang K, Wang M, Medovoy D, Whitaker JW, Ding B, Li N, Zheng L, Wang W.
Constructing 3D interaction maps from 1D epigenomes.
Nat Commun. 2016 Mar 10;7:10812. doi: 10.1038/ncomms10812. PMID: 26960733; PMCID: PMC4792925.