drFAST 1.0
:: DESCRIPTION
drFAST is designed to map di-base reads (SOLiD color space reads) to reference genome assemblies; in a fast and memory-efficient manner.
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::DEVELOPER
Lab for Bioinformatics and Computational Genomics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- C Complier
:: DOWNLOAD
:: MORE INFORMATION
Citation
mrsFAST:
- mrsFAST: a cache-oblivious algorithm for short-read mapping. F. Hach, F. Hormozdiari, C. Alkan, F. Hormozdiari, I. Birol, E.E. Eichler, S.C.Sahinalp, Nature Methods, Aug;7(8):576-7, 2010.
mrFAST:
- Personalized copy number and segmental duplication maps using next-generation sequencing. C. Alkan, J.M. Kidd, T. Marques-Bonet, G. Aksay, F. Antonacci, F. Hormozdiari, J.O. Kitzman, C. Baker, M. Malig, O. Mutlu, S.C. Sahinalp, R.A. Gibbs, E.E. Eichler, Nature Genetics, Oct, 41(10):1061-1067, 2009