CyanoEXpress is a user-friendly web-server, which enables interactive exploration of curated genome-wide expression data for the cyanobacterium Synechocystis sp. PCC 6803. CyanoEXpress is regularly updated with new data retrieved from public repositories: Gene Expression Omnibus, ArrayExpress and KEGG. Quality control, data pre-processing and normalization have been carried out to ensure the reliability of the data. Currently, CyanoEXpress comprises expression data from 718 microarray measurements carried out in 33 independent studies. Notably, changes in expression during both environmental and genetic perturbations are included in the integrated data set. In total, CyanoEXpress includes over distinct 177 expression entries for 3073 Synechocystis genes.
Systems Biology and Bioinformatics Laboratory @ University of Algarve
- Web Browser
:: MORE INFORMATION
Bioinformation. 2012;8(13):634-8. doi: 10.6026/97320630008634. Epub 2012 Jul 6.
CyanoEXpress: A web database for exploration and visualisation of the integrated transcriptome of cyanobacterium Synechocystis sp. PCC6803.
Hernandez-Prieto MA, Futschik ME.