CoGAPS 3.10.0
:: DESCRIPTION
CoGAPS identifies overlapping coregulation between genes and improves inference of biological process activity. CoGAPS achieves this improvement by combining an MCMC matrix factorization algorithm (GAPS) with a threshold-independent statistic inferring activity on gene sets.
::DEVELOPER
Division of Biostatistics and Bioinformatics – Johns Hopkins University Oncology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/Windows/MacOsX
- R
- BioConductor
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2010 Nov 1;26(21):2792-3. doi: 10.1093/bioinformatics/btq503. Epub 2010 Sep 1.
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.
Fertig EJ1, Ding J, Favorov AV, Parmigiani G, Ochs MF.