CLOBB 2.0

:: DESCRIPTION

CLOBB (Cluster on the basis of BLAST similarity) takes a set of DNA sequences and clusters them into groups which putatively derive from the same gene. In order to operate, the user must have BLASTALL in their path. The output is a blastable fasta file named <cluster_id>EST, where cluster_id is given by the user, which contails a list of sequences with identifiers <cluster_id>00001 to <cluster_id>99999.

::DEVELOPER

John Parkinson (john.parkinson@ed.ac.uk) and Mark Blaxter , Institute of Cell, Animal and Population Biology, University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• Perl
• BLAST

:: DOWNLOAD

CLOBB

:: MORE INFORMATION

Citation:

John Parkinson , David B Guiliano and Mark Blaxter
Making sense of EST sequences by CLOBBing them
BMC Bioinformatics 2002, 3:31