cisTopic v3

:: DESCRIPTION

cisTopic is an R-package to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

::DEVELOPER

aertslab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Windows/ Linux/ MacOsX
• R

:: DOWNLOAD

cisTopic

:: MORE INFORMATION

Citation

Bravo González-Blas C, Minnoye L, Papasokrati D, Aibar S, Hulselmans G, Christiaens V, Davie K, Wouters J, Aerts S.
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data.
Nat Methods. 2019 May;16(5):397-400. doi: 10.1038/s41592-019-0367-1. Epub 2019 Apr 8. PMID: 30962623; PMCID: PMC6517279.