CellProfiler 2.1.1 / CellProfiler Analyst 2.0 r11710 – Cell Image Analysis Software

CellProfiler  2.1.1

/ CellProfiler Analyst 2.0 r11710


CellProfiler is a cell image analysis software which quantitatively measures phenotypes from thousands of images automatically, usually for high-throughput image-based cell screening experiments.CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.


CellProfiler Analyst is free open-source software for exploring and analyzing large, high-dimensional image-derived data. It includes machine learning tools for identifying complex and subtle phenotypes.


CellProfiler Team



  • Linux / Mac OsX / Windows
  • Java


CellProfilerCellProfiler Analyst



Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006)
CellProfiler: image analysis software for identifying and quantifying cell phenotypes.
Genome Biology 7:R100. PMID: 17076895

Jones TR, Kang IH, Wheeler DB, Lindquist RA, Papallo A, Sabatini DM, Golland P, Carpenter AE (2008)
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.
BMC Bioinformatics 9(1):482/doi: 10.1186/1471-2105-9-482. PMID: 19014601 PMCID: PMC2614436

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