cellassign v0.99.2 – Automated, Probabilistic Assignment of Cell Types in scRNA-seq data

cellassign v0.99.2

:: DESCRIPTION

cellassign automatically assigns single-cell RNA-seq data to known cell types across thousands of cells accounting for patient and batch specific effects. Information about a priori known markers cell types is provided as input to the model in the form of a (binary) marker gene by cell-type matrix. cellassign then probabilistically assigns each cell to a cell type, removing subjective biases from typical unsupervised clustering workflows.

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::DEVELOPER

Shah Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • R

:: DOWNLOAD

cellassign

:: MORE INFORMATION

Citation

Zhang AW, etc.
Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling,
Nat Methods. 2019 Oct;16(10):1007-1015. doi: 10.1038/s41592-019-0529-1.

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