cellassign v0.99.2
:: DESCRIPTION
cellassign automatically assigns single-cell RNA-seq data to known cell types across thousands of cells accounting for patient and batch specific effects. Information about a priori known markers cell types is provided as input to the model in the form of a (binary) marker gene by cell-type matrix. cellassign then probabilistically assigns each cell to a cell type, removing subjective biases from typical unsupervised clustering workflows.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / MacOsX / Windows
- R
:: DOWNLOAD
:: MORE INFORMATION
Citation
Zhang AW, etc.
Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling,
Nat Methods. 2019 Oct;16(10):1007-1015. doi: 10.1038/s41592-019-0529-1.