Category: Miscellaneous

EcoLens 20051212 – Browse through a Large Database of Information about Food Webs

EcoLens 20051212

:: DESCRIPTION

EcoLens allows biologists to browse through a large database of information about food webs, find webs of interest, and then visualize links using TreePlus (see below).  It is essentially a front end to relational data tables that offers coupled interaction, searching, and simple bar chart visualization to replace complex queries.

::DEVELOPER

Biodiversity Informatics Visualization Team, Human-Computer Interaction Lab , University of Maryland

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows with .NET

:: DOWNLOAD

EcoLens

:: MORE INFORMATION

JColorGrid 1.860 – Transform Numerical or Text Data into Color-grids

JColorGrid 1.860

:: DESCRIPTION

JColorGrid is a platform-independent Java application for transforming numerical or text data into color-grids. A color-grid is a generalization of the popular heat map representation that displays information two-dimensionally with an associated color hue. Color-grid representations provide an excellent means of illustrating complex data sets and can be used to identify trends, clusters and extremes in a given data set.

::DEVELOPER

Marcin P. Joachimiak, Jennifer L. Weisman and Barnaby C. H. May

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • Java

:: DOWNLOAD

JColorGrid

:: MORE INFORMATION

Citation:

Marcin P. Joachimiak, Jennifer L. Weissman and Barnaby C. H. May,
“JColorGrid: software for the visualization of biological measurements”
BMC Bioinformatics 2006, 7, 225.

Clone Manager 0.1 – Cloning and Protein Expression LIMS

Clone Manager 0.1

:: DESCRIPTION

Clone Manager – the PSF cloning and protein expression system (LIMS) is based on an Oracle database (v. 8.1.6) and a frontend developed with Microsoft Access 97. In addition, some perl scripts and Java programs are used for batch data entry.

::DEVELOPER

Protein Structure Factory

:: REQUIREMENTS

:: DOWNLOAD

Clone Manager

:: MORE INFORMATION

Please contact Konrad Büssow for questions/comments regarding this software.

Spector II – Calculate Concentration of Oligonucleotides based on OD Values

Spector II

:: DESCRIPTION

Spector is a freeware stand-alone program that calculates the concentration of oligonucleotides based on OD values. Values can be printed or collated into a file for pemanent record keeping.

::DEVELOPER

Lawrence’s Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Spector

:: MORE INFORMATION

ChemSpotlight 2.0 – Plugin of MacOsX Spotlight for Reading Chemical Files

ChemSpotlight 2.0

:: DESCRIPTION

ChemSpotlight is a Spotlight metadata importer plugin for Mac OS X, which reads common chemical file formats using the Open Babel chemistry library. Spotlight can then index and search chemical data: molecular weights, formulas, SMILES, InChI, fingerprints, etc.

::DEVELOPER

Geoff Hutchison

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

ChemSpotlight

:: MORE INFORMATION

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation version 2 of the License.

VersaCount 1.02 / VersaCount Max! 0.6 – Assist with the Counting of Cells

VersaCount 1.02

:: DESCRIPTION

VersaCount is a simple application to assist with the counting of cells by microscopy. When used with a numeric keypad, it can significantly increase counting efficiency when compared with a traditional clicker. Although it was designed for malaria work, it can be customized for a wide variety of cell counting applications.

VersaCount Max is a greatly expanded version of VersaCount that includes more registers, more equations, and more customizability.

::DEVELOPER

Charlie Kim, Derisi Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

VersaCount

:: MORE INFORMATION

Citation

Charles C Kim and Joseph L DeRisi
VersaCount: customizable manual tally software for cell counting
Source Code for Biology and Medicine 2010, 5:1

BOXIT 2007 – Database for Molecular Biology Laboratories

BOXIT 2007

:: DESCRIPTION

BOXIT is an easy to use database that helps collect, store and organize information about all your antibodies, cells, oligos, plasmids and other biological samples.

::DEVELOPER

Bernd Wollscheid – BOXIT Developer – BOXIT LabSoftware

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Windows / MacOsX

:: DOWNLOAD

BOXIT

:: MORE INFORMATION

Price

ACD/NMR Processor Academic Edition 12 – Free NMR processing software

ACD/NMR Processor Academic Edition 12

:: DESCRIPTION

ACD/NMR Processor Academic Edition has basic and advanced functions for processing 1D and 2D NMR data from any instrument quickly and efficiently. Use ACD/NMR Processor at the instrument, or away from the lab, to carry out basic spectral manipulations, attach chemical structures and assign correlations, handle spectral series, add or subtract spectra, and much more. ACD/NMR Processor Academic Edition includes ACD/ChemSketch Freeware and all of the same processing features of ACD/NMR Processor.

::DEVELOPER

Advanced Chemistry Development

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

ACD/NMR Processor Academic Edition

:: MORE INFORMATION

ACD/NMR Processor Academic Edition is for academic and non-commercial use only.

Alexa Fluor® Selection Guide – Find the Perfect Alexa Fluor® Dye

Alexa Fluor® Selection Guide

:: DESCRIPTION

Alexa Fluor® Selection Guide widget is designed to provide you with a concise and informative set of criteria for choosing the optimal Alexa Fluor® dye for your antibody or protein labeling application. Each page in this guide highlights a different Alexa Fluor® dye by summarizing key spectral data, excitation sources, and relevant product offerings. Full excitation and emission spectra are included for each of the dyes.

::DEVELOPER

Invitrogen Corporation

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Alexa Fluor® Selection Guide

:: MORE INFORMATION

N/A

LabTargets – Keep Track & Report the Status of Targets & Complexes

LabTargets

:: DESCRIPTION

LabTargets, the tracker/browser/database for proteomics, is a small application for keeping track and report the status of targets and complexes in your laboratory.

::DEVELOPER

Jaime Prilusky at Weizmann Institute of Science

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

LabTargets

:: MORE INFORMATION

Help, FAQ, Support, Suggestions:
Send an email to jaime.prilusky@weizmann.ac.il