CAP-miRSeq
:: DESCRIPTION
CAP-miRSeq is a comprehensive analysis pipeline for deep microRNA sequencing that integrates read preprocessing, alignment, mature/precursor/novel miRNA qualification, variant detection in miRNA coding region, and flexible differential expression between experimental conditions.
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::DEVELOPER
Bioinformatics Program, Division of Biomedical Statistics and Informatics, Mayo Clinic Research
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Virtual Box
- R package
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2014 Jun 3;15:423. doi: 10.1186/1471-2164-15-423.
CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data.
Sun Z1, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, Kocher JP.